Informatics tools in PubMed

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Date Title / URL Journal PubMed ID Country
Total : 15764 items (789 pages)
2013-05-21 Specificity Control for Read Alignments Using an Artificial Reference Genome Guided False Discovery Rate.

http://sourceforge.net/projects/arden/ Pubmed link
renardb@rki.de Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23685787 Pubmed link Germany
2013-05-21 Prediction of clustered RNA-binding protein motif sites in the mammalian genome.

http://zhanglab.c2b2.columbia.edu/index.php/MCarts Pubmed link

Nucleic acids research Pubmed link 23685613 Pubmed link
2013-05-21 The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification.

http://phylogenomics.berkeley.edu/phylofacts/fatcat/ Pubmed link

Nucleic acids research Pubmed link 23685612 Pubmed link
2013-05-21 JiffyNet: a web-based instant protein network modeler for newly sequenced species.

http://www.jiffynet.org Pubmed link

Nucleic acids research Pubmed link 23685435 Pubmed link
2013-05-21 DRIMust: a web server for discovering rank imbalanced motifs using suffix trees.

http://drimust.technion.ac.il Pubmed link

Nucleic acids research Pubmed link 23685432 Pubmed link
2013-05-21 Colon tumour secretopeptidome: Insights into endogenous proteolytic cleavage events in the colon tumour microenvironment.

http://merops.sanger.ac.uk/ Pubmed link

Biochimica et biophysica acta Pubmed link 23684732 Pubmed link
2013-05-18 From manual curation to visualization of gene families and networks across Solanaceae plant species.

http://solgenomics.net Pubmed link
http://solgenomics.net/ Pubmed link

Database : the journal of biological databases and curation Pubmed link 23681907 Pubmed link United States
2013-05-18 MEME-LaB: motif analysis in clusters.

http://wsbc.warwick.ac.uk/wsbcToolsWebpage/ Pubmed link
p.e.brown@warwick.ac.uk Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23681125 Pubmed link United Kingdom
2013-05-18 CAPITO - A web server based analysis and plotting tool for circular dichroism data.

http://capito.nmr.fli-leibniz.de Pubmed link
cwiede@fli-leibniz.de Pubmed link
mago@fli-leibniz.de Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23681122 Pubmed link Germany
2013-05-18 DrugMap Central (DMC), an on-line query and visualization tool to facilitate drug repositioning studies.

http://r2d2drug.org/DMC.aspx Pubmed link
STWong@tmhs.org Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23681121 Pubmed link United States
2013-05-18 Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB.

http://catsid.llnl.gov Pubmed link

Nucleic acids research Pubmed link 23680785 Pubmed link United States
2013-05-18 DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.

http://www.microrna.gr/webServer Pubmed link

Nucleic acids research Pubmed link 23680784 Pubmed link Greece
2013-05-18 Disk-based k-mer counting on a PC.

http://sun.aei.polsl.pl/kmc Pubmed link

BMC bioinformatics Pubmed link 23679007 Pubmed link Poland
2013-05-17 ReviSTER: An automated pipeline to revise misaligned reads to simple tandem repeats.

http://revister.sourceforge.net Pubmed link
htae@vbi.vt.edu Pubmed link
garner@vbi.vt.edu Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23677944 Pubmed link United States
2013-05-17 Updating RNA-Seq analyses after re-annotation.

http://bio.math.berkeley.edu/ReXpress/ Pubmed link
lpachter@math.berkeley.edu Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23677943 Pubmed link United States
2013-05-17 PconsD: Ultra rapid, accurate model quality assessment for protein structure prediction.

http://d.pcons.net/ Pubmed link
arne@bioinfo.se Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23677942 Pubmed link Sweden
2013-05-17 Identification of hidden relationships from the coupling of Hydrophobic Cluster Analysis and Domain Architecture information.

http://www.impmc.upmc.fr/ Pubmed link
isabelle.callebaut@impmc.upmc.fr Pubmed link

Bioinformatics (Oxford, England) Pubmed link 23677940 Pubmed link France
2013-05-17 SGAtools: one-stop analysis and visualization of array-based genetic interaction screens.

http://sgatools.ccbr.utoronto.ca Pubmed link

Nucleic acids research Pubmed link 23677617 Pubmed link United States
2013-05-17 CovalentDock Cloud: a web server for automated covalent docking.

http://docking.sce.ntu.edu.sg/ Pubmed link

Nucleic acids research Pubmed link 23677616 Pubmed link China
2013-05-17 aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

http://aleaves.cdb.riken.jp/ Pubmed link
http://mafft.cbrc.jp/alignment/server/ Pubmed link

Nucleic acids research Pubmed link 23677614 Pubmed link United States