Informatics tools in PubMed

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Date Title / URL Journal PubMed ID Country
Total : 13104 items (656 pages)
2012-01-27 Improved prediction of RNA tertiary structure with insights into native state dynamics.

http://www.github.com/jpbida/rsim Pubmed link

RNA (New York, N.Y.) Pubmed link 22279150 Pubmed link
2012-01-27 GMCT : A Monte Carlo simulation package for macromolecular receptors.

http://www.bisb.uni-bayreuth.de Pubmed link

Journal of computational chemistry Pubmed link 22278916 Pubmed link
2012-01-27 Protein dynamics and conformational selection in bidirectional signal transduction.

http://www.biomedcentral.com/2046-1682/5/2 Pubmed link

BMC biology Pubmed link 22277130 Pubmed link
2012-01-27 miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes.

http://mirdsnp.ccr.buffalo.edu Pubmed link

BMC genomics Pubmed link 22276777 Pubmed link
2012-01-26 Fast computation and applications of genome mappability.

http://gemlibrary.sourceforge.net Pubmed link

PloS one Pubmed link 22276185 Pubmed link France
2012-01-26 Networks of emotion concepts.

http://www.becs.tkk.fi/similaritynets/ Pubmed link

PloS one Pubmed link 22276099 Pubmed link Finland
2012-01-26 COINS: An Innovative Informatics and Neuroimaging Tool Suite Built for Large Heterogeneous Datasets.

http://coins.mrn.org Pubmed link

Frontiers in neuroinformatics Pubmed link 22275896 Pubmed link United States
2012-01-25 KB-Rank: efficient protein structure and functional annotation identification via text query.

http://protein.tcmedc.org/KB-Rank Pubmed link

Journal of structural and functional genomics Pubmed link 22270457 Pubmed link United States
2012-01-25 BootstRatio: A web-based statistical analysis of fold-change in qPCR and RT-qPCR data using resampling methods.

http://regstattools.net/br Pubmed link

Computers in biology and medicine Pubmed link 22270228 Pubmed link Spain
2012-01-25 ProBiS-Database: Pre-calculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures.

http://probis.cmm.ki.si/database Pubmed link

Journal of chemical information and modeling Pubmed link 22268964 Pubmed link Slovenia
2012-01-25 SoMART, a web server for plant miRNA, tasiRNA and target gene analysis.

http://somart.ist.berkeley.edu Pubmed link

The Plant journal : for cell and molecular biology Pubmed link 22268718 Pubmed link United States
2012-01-25 AFLPMax: a user-friendly application for computing the optimal number of amplified fragment length polymorphism markers needed in phylogenetic reconstruction.

http://webs.uvigo.es/acraaj/AFLPMax.htm Pubmed link

Mol Ecol Resour Pubmed link 22268698 Pubmed link Spain
2012-01-24 EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data.

http://lbgi.igbmc.fr/barcodes Pubmed link

Evolutionary bioinformatics online Pubmed link 22267905 Pubmed link France
2012-01-24 SAFE Software and FED Database to Uncover Protein-Protein Interactions using Gene Fusion Analysis.

http://www.bioacademy.gr/bioinformatics/projects/ProteinFusion/index.htm Pubmed link

Evolutionary bioinformatics online Pubmed link 22267904 Pubmed link Greece
2012-01-24 LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes.

http://lcgbase.big.ac.cn/LCGbase Pubmed link

Evolutionary bioinformatics online Pubmed link 22267903 Pubmed link China
2012-01-24 Mining and integration of pathway diagrams from imaging data.

http://www.biologicalnetworks.org Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22267504 Pubmed link United States
2012-01-21 A powerful test for multiple rare variants association studies that incorporates sequencing qualities.

http://qmsat.sourceforge.net/ Pubmed link

Nucleic acids research Pubmed link 22262732 Pubmed link United States
2012-01-21 medpie: An information extraction package for medical message board posts.

http://www.cis.upenn.edu/~ungar/medpie.zipDependencies Pubmed link
ungar@cis.upenn.edu Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22262673 Pubmed link United States
2012-01-21 A review of thresholding strategies applied to human chromosome segmentation.

http://bioimlab.dei.unipd.it Pubmed link

Computer methods and programs in biomedicine Pubmed link 22261220 Pubmed link Italy
2012-01-21 Online usability and patients with long-term conditions: A mixed-methods approach.

http://www.kiesbeter.nl Pubmed link

International journal of medical informatics Pubmed link 22261086 Pubmed link Netherlands