Informatics tools in PubMed

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Date Title / URL Journal PubMed ID Country
Total : 10257 items (513 pages)
2010-09-02 Protein-protein docking benchmark version 4.0.

http://zlab.umassmed.edu/benchmark/ Pubmed link

Proteins Pubmed link 20806234 Pubmed link United States
2010-09-02 jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web.

http://www.jsphylosvg.com Pubmed link

PloS one Pubmed link 20805892 Pubmed link United States
2010-09-02 The missing graphical user interface for genomics.

http://genomebiology.com/2010/11/8/R86 Pubmed link

Genome biology Pubmed link 20804568 Pubmed link United States
2010-09-02 Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism.

http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY Pubmed link

Journal of proteome research Pubmed link 20804128 Pubmed link United States
2010-08-31 Model-Based Clustering of Microarray Expression Data via Latent Gaussian Mixture Models.

http://www.paulmcnicholas.info Pubmed link
pmcnicho@uoguelph.ca Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20802251 Pubmed link Canada
2010-08-31 MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery.

http://www.netlab.uky.edu/p/bioinfo/MapSplice Pubmed link

Nucleic acids research Pubmed link 20802226 Pubmed link United States
2010-08-31 XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography.

http://sites.google.com/site/xmsfilter/ Pubmed link
jrbcast@ace.ual.es Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20802209 Pubmed link Spain
2010-08-31 Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling.

http://www.sanger.ac.uk/arnie Pubmed link

Molecular & cellular proteomics : MCP Pubmed link 20802085 Pubmed link United Kingdom
2010-08-31 Simple sequence-based kernels do not predict protein-protein in-teractions.

http://www.bioinformatics.leeds.ac.uk/BRS-nonint/ Pubmed link
D.R.Westhead@leeds.ac.uk Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20801913 Pubmed link China
2010-08-31 Ontology- and graph-based similarity assessment in biological networks.

http://rosalind.infj.ulst.ac.uk/SimTrek.html Pubmed link
Francisco.Azuaje@crp-sante.lu Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20801912 Pubmed link United Kingdom
2010-08-31 miRNAkey: a software for microRNA Deep Sequencing analysis.

http://ibis.tau.ac.il/miRNAkey Pubmed link
nshomron@post.tau.ac.il Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20801911 Pubmed link Israel
2010-08-31 A Study of the Efficiency of Pooling in Haplotype Estimation.

http://www.stat.nus.edu.sg/~staxj/pooling Pubmed link
stakuka@nus.edu.sg Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20801910 Pubmed link Singapore
2010-08-31 ncRNAimprint: A comprehensive database of mammalian imprinted noncoding RNAs.

http://rnaqueen.sysu.edu.cn/ncRNAimprint Pubmed link

RNA (New York, N.Y.) Pubmed link 20801769 Pubmed link China
2010-08-31 An exploratory data analysis method to reveal modular latent structures in high-throughput data.

http://userwww.service.emory.edu/~tyu8/MLSA/ Pubmed link

BMC bioinformatics Pubmed link 20799972 Pubmed link United States
2010-08-31 Mapping Haplotype-haplotype Interactions with Adaptive LASSO.

http://www.stt.msu.edu/~cui/software.html Pubmed link

BMC genetics Pubmed link 20799953 Pubmed link United States
2010-08-28 CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.

http://carmen.cebitec.uni-bielefeld.de Pubmed link

Genet Mol Res Pubmed link 20799163 Pubmed link Germany
2010-08-28 InfarctSizer: computing infarct volume from brain images of a stroke animal model.

http://wilab.inha.ac.kr/brainimage Pubmed link

Computer methods in biomechanics and biomedical engineering Pubmed link 20799117 Pubmed link Korea
2010-08-28 RDP3: A flexible and fast computer program for analysing recombination.

http://darwin.uvigo.es/rdp/rdp.html Pubmed link
darrenpatrickmartin@gmail.com Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20798170 Pubmed link South Africa
2010-08-28 METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics.

http://www.jcvi.org/metarep Pubmed link
http://github.com/jcvi/METAREP Pubmed link
syooseph@jcvi.org Pubmed link

Bioinformatics (Oxford, England) Pubmed link 20798169 Pubmed link United States
2010-08-28 PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan.

http://www.pdbj.org/ Pubmed link

Database : the journal of biological databases and curation Pubmed link 20798081 Pubmed link Japan