Informatics tools in PubMed

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Date Title / URL Journal PubMed ID Country
Total : 13657 items (683 pages)
2012-05-16 Learning transcriptional regulatory relationships using sparse graphical models.

http://grnl1.codeplex.com Pubmed link

PloS one Pubmed link 22586449 Pubmed link United States
2012-05-16 HCS-Analyzer: Open source software for High-Content Screening data correction and analysis.

http://hcs-analyzer.ip-korea.org Pubmed link
dorvalt@ip-korea.org Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22586178 Pubmed link Korea
2012-05-16 CACG: A Database for Comparative Analysis of Conjoined Genes.

http://cgc.kribb.re.kr/map/ Pubmed link

Genomics Pubmed link 22584068 Pubmed link Korea
2012-05-16 TOPPAS: A graphical workflow editor for the analysis of high-throughput proteomics data.

http://www.OpenMS.de/TOPPAS Pubmed link

Journal of proteome research Pubmed link 22583024 Pubmed link Germany
2012-05-15 PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.

http://bioserv.rpbs.univ-paris-diderot.fr/PEP-FOLD Pubmed link

Nucleic acids research Pubmed link 22581768 Pubmed link France
2012-05-15 Paralogous annotation of disease-causing variants in Long QT syndrome genes.

http://cardiodb.org/Paralogue_Annotation/ Pubmed link
http://www.lrg-sequence.org/ Pubmed link

Human mutation Pubmed link 22581653 Pubmed link United Kingdom
2012-05-15 SRMA: an R package for resequencing array data analysis.

http://cran.r-project.org/ Pubmed link
http://odin.mdacc.tmc.edu/~wwang7/SRMAIndex.html Pubmed link
wwang7@mdanderson.org Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22581181 Pubmed link United States
2012-05-15 iFad: an integrative factor analysis model for drug-pathway association inference.

http://bioinformatics.med.yale.edu/group/ Pubmed link
hongyu.zhao@yale.edu Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22581178 Pubmed link United States
2012-05-15 Exhaustive Database Searching for Amino Acid Mutations in Proteomes.

http://code.google.com/p/sipros Pubmed link
panc@ornl.gov Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22581177 Pubmed link United States
2012-05-15 Software support for SBGN maps: SBGN-ML and LibSBGN.

http://libsbgn.sourceforge.net Pubmed link
sbgn-libsbgn@lists.sourceforge.net Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22581176 Pubmed link United Kingdom
2012-05-15 Fast and sensitive mapping of bisulfite-treated sequencing data.

http://www.bioinf.uni-leipzig.de/Software/segemehl Pubmed link
steve@bioinf.uni-leipzig.de Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22581174 Pubmed link Germany
2012-05-15 Ontology-Guided Feature Engineering for Clinical Text Classification.

http://code.google.com/p/ytex Pubmed link

Journal of biomedical informatics Pubmed link 22580178 Pubmed link United States
2012-05-12 Chromatographic retention time prediction for posttranslationally modified peptides.

http://per-colator.com Pubmed link
http://elude.sbc.su.se Pubmed link

Proteomics Pubmed link 22577017 Pubmed link Sweden
2012-05-12 Sigpep: Calculating unique peptide signature transition sets in a complete proteome background.

http://iomics.ugent.be/sigpep Pubmed link

Proteomics Pubmed link 22577015 Pubmed link Belgium
2012-05-12 QGRS-H Predictor: a web server for predicting homologous quadruplex forming G-rich sequence motifs in nucleotide sequences.

http://quadruplex.ramapo.edu/qgrs/app/start Pubmed link

Nucleic acids research Pubmed link 22576365 Pubmed link United States
2012-05-12 An Energy-Based conformer library for side chain optimization: Improved prediction and adjustable sampling.

http://seneslab.org/EBL Pubmed link

Proteins Pubmed link 22576292 Pubmed link United States
2012-05-12 CPSS: A computational platform for the analysis of small RNA deep sequencing data.

http://mcg.ustc.edu.cn/db/cpss/index.html Pubmed link
http://mcg.ustc.edu.cn/sdap1/cpss/index.html Pubmed link
xueyu@mail.hust.edu.cn Pubmed link
qshi@ustc.edu.cn Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22576177 Pubmed link United States
2012-05-12 Mosaic: Making Biological Sense of Complex Networks.

http://nrnb.org/tools/mosaic Pubmed link
apico@gladstone.ucsf.edu Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22576176 Pubmed link United States
2012-05-12 CalMaTe: A method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.

http://cran.rproject.org/ Pubmed link
http://www.aroma-project.org/ Pubmed link
arubio@ceit.es Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22576175 Pubmed link United States
2012-05-12 MicrobeDB: a locally maintainable database of microbial genomic sequences.

http://github.com/mlangill/microbedb/ Pubmed link
morgan.g.i.langille@gmail.com Pubmed link

Bioinformatics (Oxford, England) Pubmed link 22576174 Pubmed link Canada